Software

Estadística - Matemáticas

MVSP 3 for Windows A MultiVariate Statistical Package

R-proyect The R Project for Statistical Computing (libre distibución)

Vista The visual statistical system (libre distibución)

Scilab- (Scicos) Is a scientific software package for numerical computations providing a powerful open computing environment for engineering and scientific applications. It is developed since 1990 by researchers from INRIA and ENPC. Distributed freely via the Internet since 1994, Scilab is currently being used in educational and industrial environnments around the world.(libre distibución)

Maxima - a sophisticated computer algebra system.(libre distibución)

 

Molecular

NAMD - Parallel Molecular DynamicsNAMD is a parallel, object-oriented molecular dynamics program designed for high performance molecular dynamics simulations of large biomolecular systems.

CloneIt An ANSI-C program finding sub-cloning strategies, in-frame deletions and frameshifts using restriction enzymes and DNA polymerases.

DNAToolsSequence analysis software for Windows 95/98/NT. DNATools is a program package for handling and analysis of DNA and protein sequences.

RasMol Molecular Graphics Visualisation Tool (libre distibución)

VMD - Visual Molecular Dynamics VMD is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc.

XAct 1.0 for Windows 95/98 XAct is a stand-alone application for Microsoft Windows that can be used to construct, maintain, and record the results of many crystallisation experiments.

HPLC - WIZARDA full HPLC Elusion Pattern Refinement Program.HPLC -WIZARD is a Microsoft® Windows 95/98/NT application designed for fast and easy calculation of amino acid distributions from HPLC - chromatograms.

pDRAW32 DNA analysis softwareAcaClone software

 

Genética - Evolución

DAMBE (Data Analysis in Molecular Biology and Evolution) Is an integrated software package for retrieving, converting, manipulating, aligning and analyzing molecular sequence data, including phylogenetic reconstruction, testing alternative phylogenetic hypotheses, and fit various probability distributions to substitution data. It is a 32-bit program run on Windows 95/98/NT platform (also on MACINTOSH running the virtual PC software).

EMBOSS:The European Molecular Biology Open Software Suite EMBOSS is a package of high-quality FREE Open Source software for sequence analysis.(libre distibución)

BIOCONDUCTOR is an open source and open development software project for the analysis and comprehension of genomic data. (libre distibución)

 

SIG

GRASS(libre distibución)

 

Programación

Python Is a clear and powerful object-oriented programming language, comparable to Perl, Tcl, Scheme, or Java. (libre distibución)

Biopython The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.(libre distibución)

Boa Constructor is a cross platform Python IDE and wxPython GUI Builder. It offers visual frame creation and manipulation, an object inspector, many views on the source like object browsers, inheritance hierarchies, doc string generated html documentation, an advanced debugger and integrated help.(libre distibución)

Bioperl: he Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics and life science research into a set of standard CPAN-style, well-documented, and freely available Perl modules. Perl provides unparalleled support for many tasks common in bioinformatics and life science research yet there are no standard Perl modules for biology. We hope to help fill this void.Reusable Perl Modules for Bioinformatics (libre distibución)

Perl(libre distibución)

Biojava The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data. This will include objects for manipulating sequences, file parsers, CORBA interoperability, DAS, access to ACeDB, dynamic programming, and simple statistical routines to name just a few things.(libre distibución)

 

Gráfico

GIMP Software estilo Photoshop para manejo digital de imágenes(libre distibución)

Sodipodi Programa para hacer gráficos vectoriales estilo Corell Draw, o Illustrator(libre distibución)

Blender Software para modelamiento en 3D, estilo 3DMax(libre distibución)

 

Oficina

Open Office OpenOffice.org is both an Open Source product and a project. The product is a multi-platform office productivity suite. It includes the key desktop applications, such as a word processor, spreadsheet, presentation manager, and drawing program, with a user interface and feature set similar to other office suites’. Sophisticated and flexible, OpenOffice.org also works transparently with a variety of file formats, including those of Microsoft Office. Available in 25 languages with more being constantly added by the community. OpenOffice.org runs stably and natively on Solaris, Linux (including PPC Linux), and Windows. Additional ports, such as for FreeBSD, IRIX, and Mac OS X, are in various stages of completion. Written in C++ and with documented APIs licensed under the LGPL and SISSL Open Source licenses, OpenOffice.org allows any knowledgeable developer to benefit from the source. And, because the file format for OpenOffice.org is XML, interoperability is easy, making future development and adoption more certain. (libre distibución)

Colecciones

El Sistema de Información Biótica (Biótica©) ha sido diseñado especialmente para el manejo de datos curatoriales, nomenclaturales, geográficos, bibliográficos y de parámetros ecológicos. Tiene el propósito de ayudar, de una forma confiable y sencilla, en la captura y actualización de los datos.

University of Minnesota College of Biological Sciences Biology Software and Hardware

Molecular Biology Software